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This vignette will show you how to perform a shortest path calculation using RBGL on a network in Cytoscape. RBGL is a Biocondutor package that offers an array of analytical functions for graphs.
Required Software
The whole point of RCy3 is to connect with Cytoscape. You will need to install and launch Cytoscape:
Shortest Path with RBGL
Convert a sample Cytoscape network to a graph object.
Identify start and finish nodes (styling is optional).
Perform shortest path calculation.
Visualize results in Cytoscape.
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